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Publications  for  the  collection  HAL LS2N-COMBI  for  2017

Total of the publications found : 27

Overview of LS2N-COMBI publications by types

International journals with reviewing committee (ART_INT)

    • [1] G. Fertin, G. Jean, E. Tannier. Algorithms for computing the double cut and join distance on both gene order and intergenic sizes. In Algorithms for Molecular Biology ; éd. BioMed Central, 2017, vol. 12.
    • [3] J. Laniau, C. Frioux, J. Nicolas, C. Baroukh, M. Cortés, J. Got, C. Trottier, D. Eveillard, A. Siegel. Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks. In PeerJ ; éd. PeerJ, 2017, vol. 5.
    • [4] K. Stec, L. Caputi, P. Buttigieg, D. d'Alelio, F. Ibarbalz, M. Sullivan, S. Chaffron, C. Bowler, M. Ribera d'Alcalà, D. Iudicone. Modelling plankton ecosystems in the meta-omics era. Are we ready?. In Marine Genomics ; éd. Elsevier, 2017, vol. 32.
    • [5] M. David, G. Fertin, H. Rogniaux, D. Tessier. SpecOMS: A Full Open Modification Search Method Performing All-to-All Spectra Comparisons within Minutes. In Journal of Proteome Research ; éd. American Chemical Society, 2017, vol. 16, num. 8.
    • [6] S. Videla, J. Saez-Rodriguez, C. Guziolowski, A. Siegel. caspo: a toolbox for automated reasoning on the response of logical signaling networks families. In Bioinformatics ; éd. Oxford University Press (OUP), 2017.
    • [7] I. Rusu. log-Lists and their applications to sorting by transpositions, reversals and block-interchanges. In Theoretical Computer Science ; éd. Elsevier, 2017, vol. 660.
    • [8] S. Prigent, C. Frioux, S. Dittami, S. Thiele, A. Larhlimi, G. Collet, G. Fabien, J. Got, D. Eveillard, J. Bourdon, F. Plewniak, T. Tonon, A. Siegel. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. In PLoS Computational Biology ; éd. Public Library of Science, 2017, vol. 13, num. 1.
    • [9] C. Negri Lintzmayer, G. Fertin, Z. Dias. Sorting permutations by prefix and suffix rearrangements. In Journal of Bioinformatics and Computational Biology ; éd. World Scientific Publishing, 2017, vol. 15, num. 1.
    • [10] M. Budinich, J. Bourdon, A. Larhlimi, D. Eveillard. A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems.. In PLoS ONE ; éd. Public Library of Science, 2017, vol. 12, num. 2.
    • [11] L. Fitime, O. Roux, C. Guziolowski, L. Paulevé. Identification of bifurcation transitions in biological regulatory networks using Answer-Set Programming. In Algorithms for Molecular Biology ; éd. BioMed Central, 2017, vol. 12, num. 1.
    • [12] V. Picard, A. Siegel, J. Bourdon. A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks. In Journal of Computational Biology ; éd. Mary Ann Liebert, 2017, vol. 24, num. 8.
    • [13] B. Miannay, S. Minvielle, O. Roux, P. Drouin, H. Avet-Loiseau, C. Guérin-Charbonnel, W. Gouraud, M. Attal, T. Facon, N. Munshi, P. Moreau, L. Campion, F. Magrangeas, C. Guziolowski. Logic programming reveals alteration of key transcription factors in multiple myeloma. In Scientific Reports ; éd. Nature Publishing Group, 2017, vol. 7, num. 1.
    • [14] I. Rusu. Graph matching problems and the NP-hardness of sortedness constraints. In Theoretical Computer Science ; éd. Elsevier, 2017, vol. 695.
    • [15] F. Thomas, P. Bordron, D. Eveillard, G. Michel. Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses. In Frontiers in Microbiology ; éd. Frontiers Media, 2017, vol. 8.
    • [16] B. Delahaye, D. Eveillard, N. Bouskill. On the Power of Uncertainties in Microbial System Modeling: No Need To Hide Them Anymore. In mSystems, vol. 2, num. 6. 05-12-2017

International conferences with reviewing committee (COMM_INT)

    • [17] A. Benoiston, L. Bittner, L. Guidi, S. Chaffron, D. Eveillard, S. Ayata, G. Jean, E. Pelletier, S. Pesant, C. de Vargas, E. Karsenti, C. Bowler, G. Gorsky, T. Consortium. Plankton networks correlated to the biological carbon pump in the global ocean. In Journée analyse des réseau, GDR génomique environnementale, 2017, Nantes, France.
    • [18] L. Bulteau, G. Fertin, C. Komusiewicz. Beyond Adjacency Maximization: Scaffold Filling for New String Distances. In 28th Annual Symposium on Combinatorial Pattern Matching, 2017, Warsaw, Pologne.
    • [19] G. Fertin, J. Fradin, G. Jean. Algorithmic Aspects of the Maximum Colorful Arborescence Problem. In Theory and Applications of Models of Computation - 14th Annual Conference, avril 2017, Berne, Suisse.
    • [20] M. Lefebvre, J. Bourdon, C. Guziolowski, A. Gaignard. Regulation and signalization graph assembly through Linked Open Data. In JOBIM 2017, juillet 2017, Lille, France.
    • [21] Y. Lelièvre, A. Bihouée, E. Charpentier, A. Gaignard, S. Souchet, D. Vintache. Developing and sharing reproducible bioinformatics pipelines: best practices. In JOBIM 2017, juillet 2017, Lille, France.
    • [22] D. Dumez, X. Gandibleux, I. Rusu. Datastructures for Filtering and Storing Non-Dominated Points. In MOPGP'17 :The 12th International Conference on Multiple Objective Programming and Goal Programming, octobre 2017, Metz, France.

National conferences with reviewing committee (COMM_NAT)

    • [23] C. Lippold, C. Trottier, C. Frioux, M. Chevallier, S. Dittami, A. Siegel. Toward the study of metabolic functions in algal holobionts. In 4ème Colloque de Génomique Environnementale, septembre 2017, Marseille, France.
    • [24] V. Potdevin, M. Chevallier, R. Garrido Oter, A. Siegel, S. Hacquard, D. Eveillard, P. Vandenkoornhuyse. Toward a better understanding of the plant microbiota. In 4ème colloque de Génomique Environnementale, septembre 2017, Marseille, France.

Books - books sections - directions of work or proceedings (OUV)

    • [25] G. Jean, A. Radulescu, I. Rusu. The Contig Assembly Problem and Its Algorithmic Solutions. In Algorithms for Next-Generation Sequencing Data, pp. 267-298. 2017

PhD Thesis (THESE)

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