Publication de la collection HAL LS2N-COMBI pour 2022
Revues internationales avec comité de lecture (ART_INT)
- [1] A. Régimbeau, M. Budinich, A. Larhlimi, J. Pierella Karlusich, O. Aumont, L. Mémery, C. Bowler, D. Eveillard. Contribution of genome‐scale metabolic modelling to niche theory. In Ecology Letters ; éd. Wiley, 2022, vol. 25, num. 6.https://hal.science/hal-03635158
- [2] Y. Combot, V. Salo, G. Chadeuf, M. Hölttä, K. Ven, I. Pulli, S. Ducheix, C. Pecqueur, O. Renoult, B. Lak, S. Li, L. Karhinen, I. Belevich, C. Le May, J. Rieusset, S. Le Lay, M. Croyal, K. Tayeb, H. Vihinen, E. Jokitalo, K. Törnquist, C. Vigouroux, B. Cariou, J. Magré, A. Larhlimi, E. Ikonen, X. Prieur. Seipin localizes at endoplasmic-reticulum-mitochondria contact sites to control mitochondrial calcium import and metabolism in adipocytes. In Cell Reports ; éd. Elsevier Inc, 2022, vol. 38, num. 2.https://hal.sorbonne-universite.fr/hal-03534214
- [3] A. Zayed, J. Wainaina, G. Dominguez-Huerta, E. Pelletier, J. Guo, M. Mohssen, F. Tian, A. Pratama, B. Bolduc, O. Zablocki, D. Cronin, L. Solden, E. Delage, A. Alberti, J. Aury, Q. Carradec, C. da Silva, K. Labadie, J. Poulain, H. Ruscheweyh, G. Salazar, E. Shatoff, R. Bundschuh, K. Fredrick, L. Kubatko, S. Chaffron, A. Culley, S. Sunagawa, J. Kuhn, P. Wincker, M. Sullivan, S. Acinas, M. Babin, P. Bork, E. Boss, C. Bowler, G. Cochrane, C. de Vargas, G. Gorsky, L. Guidi, N. Grimsley, P. Hingamp, D. Iudicone, O. Jaillon, S. Kandels, L. Karp-Boss, E. Karsenti, F. Not, H. Ogata, N. Poulton, S. Pesant, C. Sardet, S. Speich, L. Stemmann, M. Sullivan, S. Sungawa, P. Wincker. Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome. In Science ; éd. American Association for the Advancement of Science (AAAS), 2022, vol. 376, num. 6589.https://hal.science/hal-03869389
- [4] A. Zayed, J. Wainaina, G. Dominguez-Huerta, E. Pelletier, J. Guo, M. Mohssen, F. Tian, A. Pratama, B. Bolduc, O. Zablocki, D. Cronin, L. Solden, E. Delage, A. Alberti, J. Aury, Q. Carradec, C. da Silva, K. Labadie, J. Poulain, H. Ruscheweyh, G. Salazar, E. Shatoff, R. Bundschuh, K. Fredrick, L. Kubatko, S. Chaffron, A. Culley, S. Sunagawa, J. Kuhn, P. Wincker, M. Sullivan. Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome. In Science ; éd. American Association for the Advancement of Science (AAAS), 2022, vol. 376, num. 6589.https://hal.science/hal-03781924
- [5] S. Schroeter, D. Eveillard, S. Chaffron, J. Zoppi, B. Kampe, P. Lohmann, N. Jehmlich, M. von Bergen, C. Sanchez-Arcos, G. Pohnert, M. Taubert, K. Küsel, G. Gleixner. Microbial community functioning during plant litter decomposition. In Scientific Reports ; éd. Nature Publishing Group, 2022, vol. 12, num. 1.https://hal.science/hal-03781927
- [6] M. Caracciolo, F. Rigaut-Jalabert, S. Romac, F. Mahé, S. Forsans, J. Gac, L. Arsenieff, M. Manno, S. Chaffron, T. Cariou, M. Hoebeke, Y. Bozec, E. Goberville, F. Le Gall, L. Guilloux, A. Baudoux, C. de Vargas, F. Not, E. Thiébaut, N. Henry, N. Simon. Seasonal dynamics of marine protist communities in tidally mixed coastal waters. In Molecular Ecology ; éd. Wiley, 2022, vol. 31, num. 14.https://hal.science/hal-03781932
- [7] G. Dominguez-Huerta, A. Zayed, J. Wainaina, J. Guo, F. Tian, A. Pratama, B. Bolduc, M. Mohssen, O. Zablocki, E. Pelletier, E. Delage, A. Alberti, J. Aury, Q. Carradec, C. da Silva, K. Labadie, J. Poulain, C. Bowler, D. Eveillard, L. Guidi, E. Karsenti, J. Kuhn, H. Ogata, P. Wincker, A. Culley, S. Chaffron, M. Sullivan. Diversity and ecological footprint of Global Ocean RNA viruses. In Science ; éd. American Association for the Advancement of Science (AAAS), 2022, vol. 376, num. 6598.https://hal.science/hal-03781935
- [8] B. Churcheward, M. Millet, A. Bihouée, G. Fertin, S. Chaffron. MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics. In mSystems, vol. 7, num. 4. 15-06-2022https://hal.science/hal-03781944
- [9] A. Abreu, E. Bourgois, A. Gristwood, R. Troublé, S. Acinas, P. Bork, E. Boss, C. Bowler, M. Budinich, S. Chaffron, C. de Vargas, T. Delmont, D. Eveillard, L. Guidi, D. Iudicone, S. Kandels, H. Morlon, F. Lombard, R. Pepperkok, J. Karlusich, G. Piganeau, A. Régimbeau, G. Sommeria-Klein, L. Stemmann, M. Sullivan, S. Sunagawa, P. Wincker, O. Zablocki, D. Arendt, J. Bilic, R. Finn, E. Heard, B. Rouse, J. Vamathevan, R. Casotti, I. Cancio, M. Cunliffe, A. Kervella, W. Kooistra, M. Obst, N. Pade, D. Power, I. Santi, T. Tsagaraki, J. Vanaverbeke. Priorities for ocean microbiome research. In Nature Microbiology ; éd. Nature Publishing Group, 2022, vol. 7, num. 7.https://hal.science/hal-03781942
- [10] D. Richter, R. Watteaux, T. Vannier, J. Leconte, P. Frémont, G. Reygondeau, N. Maillet, N. Henry, G. Benoit, A. Fernandez-Guerra, S. Suweis, R. Narci, C. Berney, D. Eveillard, F. Gavory, L. Guidi, K. Labadie, E. Mahieu, J. Poulain, S. Romac, S. Roux, C. Dimier, S. Kandels, M. Picheral, S. Searson, S. Pesant, J. Aury, J. Brum, C. Lemaitre, E. Pelletier, P. Bork, S. Sunagawa, L. Karp-Boss, C. Bowler, M. Sullivan, E. Karsenti, M. Mariadassou, I. Probert, P. Peterlongo, P. Wincker, C. de Vargas, M. Ribera d'Alcalà, D. Iudicone, O. Jaillon. Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. In eLife ; éd. eLife Sciences Publication, 2022, vol. 11.https://inria.hal.science/hal-02399723v2
- [11] E. Benoist, G. Fertin, G. Jean. L'Inférence de Protéines à travers le Modèle Peptide Quantity Assignment. In 23ème congrès annuel de la Société Française de Recherche Opérationnelle et d'Aide à la Décision, février 2022, Villeurbanne - Lyon, France.https://hal.science/hal-03595308
- [12] L. Bulteau, G. Fertin, V. Jugé, S. Vialette. Permutation Pattern Matching for Doubly Partially Ordered Patterns. In 33rd Annual Symposium on Combinatorial Pattern Matching, juin 2022, Prague, République tchèque.https://hal.science/hal-03624311
- [13] O. Abdou Arbi, A. Siegel, J. Bourdon. Contributions des entrées sur les sorties pour les réseaux métaboliques sur génomes entiers: performances et utilisation pour des études en nutrition humaine. In CARI 2022 - Colloque Africain sur la Recherche en Informatique et en Mathématiques Appliquées, octobre 2022, Yaoundé, Cameroun.https://inria.hal.science/hal-03689107v2
- [14] A. Rodrigues Oliveira, A. Oliveira Alexandrino, G. Jean, G. Fertin, U. Dias, Z. Dias. Sorting by k-Cuts on Signed Permutations. In Comparative Genomics 19th International Conference, RECOMB-CG 2022, mai 2022, La Jolla, états-Unis.In Springer Verlag (éds.), . Springer International Publishing, 2022.https://hal.science/hal-03959780
- [15] E. Benoist, G. Fertin, G. Jean. The Exact Subset MultiCover Problem. In Theory and Applications of Models of Computation. TAMC 2022, septembre 2022, Tianjin, Chine.In Springer Verlag (éds.), . Springer International Publishing, 2022.https://hal.science/hal-03958441
- [16] G. Fertin, G. Jean, A. Labarre. Sorting Genomes by Prefix Double-Cut-and-Joins. In String Processing and Information Retrieval, 29th International Symposium, SPIRE 2022, novembre 2022, Concepcion, Chili.In Springer Verlag (éds.), . Springer International Publishing, 2022.https://hal.science/hal-03958465
- [17] A. Oliveira Alexandrino, A. Rodrigues Oliveira, G. Jean, G. Fertin, U. Dias, Z. Dias. Transposition Distance Considering Intergenic Regions for Unbalanced Genomes. In Bioinformatics Research and Applications 18th International Symposium, ISBRA 2022, novembre 2022, Haifa, Israël.In Springer Verlag (éds.), . Springer Nature Switzerland, 2022.https://hal.science/hal-03958480
- [18] B. Churcheward. Models and methods for genome-resolved metagenomics. Thèses : Nantes Université. https://hal.science/tel-03983215
